The transition of the eBay affiliate program from Commission Junction to the in-house ePN program has not been a smooth one. In fact, I would venture to say that eBay probably had no idea of the amount of turmoil it would cause. Tracking and reporting glitches are one thing and eBay most likely anticipated some of this.
What they may not have expected was the outcry from so many of their affiliates over them.
Granted, as an ePN affiliate myself, it’s pretty stressful to think that you’re not being properly credited for the traffic you send, but it seems that a lot of the whining was just the result of low conversions for whatever reasons besides problems with click tracking.